STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB87565.1Chromosome partitioning protein, ParB family; InterPro IPR003115:IPR004437; COGs: COG1475 transcriptional regulator protein; KEGG: gbm:Gbem_3956 ParB-like partition protein; SPTR: A2U528 ParB-like partition proteins; SMART: ParB domain protein nuclease; PFAM: ParB domain protein nuclease; TIGRFAM: parB-like partition protein; Belongs to the ParB family. (291 aa)    
Predicted Functional Partners:
SMB87562.1
Chromosome segregation ATPase; InterPro IPR002586; COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: geo:Geob_0454 cobyrinic acid ac-diamide synthase; SPTR: A1HSN5 Cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase.
 
 0.998
SMB95448.1
Chromosome partitioning protein; InterPro IPR002586; COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: see:SNSL254_A2836 chromosome partitioning ATPase; SPTR: Q8U3E2 Soj homolog; PFAM: Cobyrinic acid ac-diamide synthase.
 
 
 0.975
SMB87558.1
ParB family protein; InterPro IPR003115:IPR004437; COGs: COG1475 transcriptional regulator protein; KEGG: hhe:HH0423 transcriptional regulator involved in chromosome partitioning ParB; SPTR: Q8EKU5 Nucleoid occlusion protein; SMART: ParB domain protein nuclease; PFAM: ParB domain protein nuclease; TIGRFAM: parB-like partition protein; Belongs to the ParB family.
 
   
0.865
rsmG
16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.817
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.680
SMB87568.1
Hypothetical protein; InterPro IPR007563; COGs: COG1811 Uncharacterized membrane protein possible Na+ channel or pump; KEGG: dat:HRM2_02860 hypothetical protein; SPTR: A1HSN1 Putative uncharacterized protein; PFAM: protein of unknown function DUF554.
       0.647
SMB96300.1
DNA translocase FtsK; SMART: AAA ATPase; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; KEGG: sat:SYN_01274 cell division protein; SPTR: A1HSD6 Cell divisionFtsK/SpoIIIE; InterPro IPR018541:IPR002543:IPR003593; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.643
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.579
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
  
 0.568
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
  
 0.559
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.