STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB88016.1Spore germination protein (amino acid permease); InterPro IPR004761; KEGG: hypothetical protein; SPTR: A3I675 Putative uncharacterized protein; PFAM: Spore germination protein; TIGRFAM: spore germination protein. (362 aa)    
Predicted Functional Partners:
SMB88020.1
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: hypothetical protein; SPTR: A3F902 GerUC; PFAM: spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.804
SMB87963.1
Spore germination protein KC; InterPro IPR008844; KEGG: hypothetical protein; SPTR: A3I9M6 Spore germination protein KC; PFAM: spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.803
SMB87951.1
Spore germination protein KA; InterPro IPR004995; KEGG: hypothetical protein; PFAM: GerA spore germination protein; SPTR: A3I672 Spore germination protein.
 
  
 0.800
SMB88027.1
Spore germination protein KA; InterPro IPR004995; KEGG: hypothetical protein; SPTR: A3I672 Spore germination protein; PFAM: GerA spore germination protein.
 
  
 0.776
SMB86379.1
Spore germination protein; InterPro IPR014239; SPTR: Q9RC82 Sporulation protein ypeB; TIGRFAM: germination protein YpeB.
 
     0.707
SMB95245.1
Stage II sporulation protein M; InterPro IPR002798:IPR014196; SPTR: A1HTQ4 Required for dissolution of the septal cell wall; RBL05740; PFAM: protein of unknown function DUF95 transmembrane; TIGRFAM: stage II sporulation protein M.
  
     0.621
SMB92047.1
gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I Metallo peptidase. MEROPS family M14C; InterPro IPR000834:IPR002477:IPR018392:IPR002482; COGs: COG2866 carboxypeptidase; KEGG: hch:HCH_00225 carboxypeptidase; SPTR: A3IAM8 Gamma-D-glutamyl-L-diamino acid endopeptidase I; SMART: peptidase M14 carboxypeptidase A; Peptidoglycan-binding LysM; PFAM: peptidase M14 carboxypeptidase A; Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding lysin domain.
  
     0.618
SMB90456.1
Spore germination protein; InterPro IPR018392:IPR001223:IPR002482:IPR011583; COGs: COG3858 glycosyl hydrolase; KEGG: xcv:XCV3208 glycoside hydrolase family 18 protein; SPTR: A3ICR4 Spore peptidoglycan hydrolase (N-acetylglucosaminidase); SMART: chitinase II; Peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; glycoside hydrolase family 18.
  
     0.616
SMB81098.1
Spore germination protein; InterPro IPR018392:IPR001223:IPR002482:IPR011583; COGs: COG3858 glycosyl hydrolase; KEGG: pfl:PFL_1213 glycosy hydrolase family protein; SPTR: A3ICR4 Spore peptidoglycan hydrolase (N-acetylglucosaminidase); SMART: chitinase II; Peptidoglycan-binding LysM; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding lysin domain.
  
     0.613
SMB90968.1
Sporulation protein YqfC; InterPro IPR009877; SPTR: A1HPD6 Putative uncharacterized protein; PFAM: protein of unknown function DUF1429; TIGRFAM: sporulation protein YqfC.
  
     0.610
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.