STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB92447.1C4-dicarboxylate transporter, DctM subunit; InterPro IPR007387:IPR010656:IPR004681; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; KEGG: dps:DP3053 DctMQ fusion protein (C4-dicarboxylate transporter); SPTR: A3JCS6 C4-dicarboxylate transport system (Permease large protein); PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit. (627 aa)    
Predicted Functional Partners:
SMB92442.1
Tripartite ATP-independent transporter solute receptor, DctP family; InterPro IPR018389:IPR004682; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; KEGG: dps:DP3054 DctP (periplasmic C4-dicarboxylate binding protein); SPTR: A1HSQ1 TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit.
 
 0.999
SMB88057.1
PFAM: Extracellular solute-binding protein, family 7, bacteria; InterPro IPR018389; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; KEGG: rsp:RSP_4016 TRAP dicarboxylate family transporter DctP subunit; SPTR: A5KTW1 Periplasmic substrate-binding transport protein, putative.
  
 0.974
SMB83330.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase; InterPro IPR001450:IPR019752:IPR019456:IPR002880:IPR017900:IPR0118 95; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; SPTR: A1HPH8 Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreduct [...]
    
  0.861
SMB85138.1
InterPro IPR018389; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; KEGG: tgr:Tgr7_2032 TRAP dicarboxylate transporter-DctP subunit; SPTR: A3U091 ABC transporter, solute-binding protein; PFAM: Extracellular solute-binding protein, family 7, bacteria.
 
  
 0.790
SMB92454.1
1,3-propanediol dehydrogenase; InterPro IPR001670:IPR018211; COGs: COG1454 Alcohol dehydrogenase class IV; KEGG: pca:Pcar_2847 alcohol dehydrogenase, class IV; SPTR: Q8TMM6 Alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase.
    
  0.746
SMB93482.1
methylmalonyl-CoA decarboxylase alpha subunit; InterPro IPR000022:IPR011762:IPR011763; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); KEGG: dal:Dalk_3780 propionyl-CoA carboxylase; SPTR: A1HP30 Carboxyl transferase; PFAM: carboxyl transferase.
    
 0.594
SMB92434.1
Transcriptional regulator, GntR family; InterPro IPR000524:IPR011663; COGs: COG2188 Transcriptional regulators; KEGG: bmt:BSUIS_B1410 hypothetical protein; SPTR: A3IFJ9 Transcriptional regulator (GntR family) protein; SMART: regulatory protein GntR HTH; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH.
 
     0.594
nnrE
NAD(P)H-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of bot [...]
     
 0.587
SMB93622.1
[Acyl-carrier-protein] S-malonyltransferase; InterPro IPR014043:IPR004410; COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; KEGG: gur:Gura_1876 malonyl CoA-acyl carrier protein transacylase; SPTR: A1HN87 Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
  
 
 0.568
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
 0.568
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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