STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB80712.1ATP-binding cassette, subfamily F, member 3; InterPro IPR003439:IPR003593:IPR017871; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; KEGG: gsu:GSU1644 putative ABC transporter ATP-binding protein; SPTR: A3I8Q3 ABC transporter (ATP-binding protein); PFAM: ABC transporter related; SMART: AAA ATPase. (470 aa)    
Predicted Functional Partners:
SMB80710.1
ABC transporter; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; KEGG: ABC transporter family protein; SPTR: P39115 Nucleotide-binding protein expZ.
     0.989
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.736
rpsO
SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
   0.730
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.728
rplD
LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
   
 
 0.726
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.723
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.722
rpmH
LSU ribosomal protein L34P; InterPro IPR000271; KEGG: dds:Ddes_1970 ribosomal protein L34; SPTR: B0TAK6 50S ribosomal protein L34; PFAM: ribosomal protein L34; TIGRFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
   0.720
rplR
LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
   0.719
rplP
LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.718
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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