STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB80916.1KEGG: hypothetical protein; SPTR: P37495 Uncharacterized protein yybI. (243 aa)    
Predicted Functional Partners:
SMB87963.1
Spore germination protein KC; InterPro IPR008844; KEGG: hypothetical protein; SPTR: A3I9M6 Spore germination protein KC; PFAM: spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family.
  
     0.693
SMB78765.1
LysM repeat-containing protein; InterPro IPR018392:IPR002482; KEGG: prw:PsycPRwf_1583 lytic transglycosylase, catalytic; SPTR: A2RHZ5 Probable N-acetylmuramidase; SMART: Peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain.
  
     0.685
SMB87966.1
Spore germination protein KB; InterPro IPR004761; KEGG: hypothetical protein; SPTR: A3F904 GerVB; PFAM: Spore germination protein; TIGRFAM: spore germination protein.
  
     0.636
SMB85624.1
Spore germination protein KB; InterPro IPR004761; KEGG: hypothetical protein; SPTR: A3F904 GerVB; PFAM: Spore germination protein; TIGRFAM: spore germination protein.
  
     0.599
SMB87436.1
SPTR: A2U5K2 Membrane protein.
  
     0.568
SMB87089.1
Protein of unknown function; SPTR: O06998 Uncharacterized protein yvdQ.
  
     0.561
SMB92047.1
gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I Metallo peptidase. MEROPS family M14C; InterPro IPR000834:IPR002477:IPR018392:IPR002482; COGs: COG2866 carboxypeptidase; KEGG: hch:HCH_00225 carboxypeptidase; SPTR: A3IAM8 Gamma-D-glutamyl-L-diamino acid endopeptidase I; SMART: peptidase M14 carboxypeptidase A; Peptidoglycan-binding LysM; PFAM: peptidase M14 carboxypeptidase A; Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding lysin domain.
  
     0.526
SMB88016.1
Spore germination protein (amino acid permease); InterPro IPR004761; KEGG: hypothetical protein; SPTR: A3I675 Putative uncharacterized protein; PFAM: Spore germination protein; TIGRFAM: spore germination protein.
  
     0.522
SMB90300.1
Protein of unknown function; SPTR: A2U6R9 Putative uncharacterized protein.
  
     0.511
SMB87842.1
InterPro IPR012854; KEGG: hypothetical protein; SPTR: A3I3Q1 Putative uncharacterized protein; PFAM: copper amine oxidase domain protein.
  
    0.480
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.