STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB80938.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
SMB80930.1
Spore coat protein CotF; InterPro IPR012851; SPTR: A2U9R7 Coat F; PFAM: Coat F domain protein.
  
    0.760
SMB84599.1
Predicted amino acid dehydrogenase; COGs: COG5322 dehydrogenase; KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase.
   
 
 0.611
SMB84610.1
Hypothetical protein; KEGG: maq:Maqu_1059 dehydrogenase-like; SPTR: A1HRQ6 Putative uncharacterized protein.
   
 
 0.611
SMB83225.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family; InterPro IPR002563:IPR004039; COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; SPTR: A1HM53 Flavin reductase domain protein, FMN-binding; PFAM: flavin reductase domain protein FMN-binding; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
  
  
 0.419
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.