STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB80958.1Phosphonoacetate hydrolase; InterPro IPR013988:IPR013987:IPR004624; COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; KEGG: psb:Psyr_0863 PhnA protein; SPTR: A3L0U1 Putative uncharacterized protein; PFAM: PhnA protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA. (113 aa)    
Predicted Functional Partners:
SMB80948.1
Phosphoglycolate phosphatase; InterPro IPR005833:IPR005834:IPR006402:IPR006439; COGs: COG0546 phosphatase; KEGG: dal:Dalk_1233 HAD-superfamily hydrolase, subfamily IA, variant 1; SPTR: A4BG41 Phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3.
       0.506
SMB80967.1
Heptaprenyl diphosphate synthase; InterPro IPR010898; COGs: COG4769 membrane protein; KEGG: tgr:Tgr7_2908 heptaprenyl diphosphate synthase component I; SPTR: A1HP08 Heptaprenyl diphosphate synthase component I; PFAM: Heptaprenyl diphosphate synthase component I.
       0.498
SMB80983.1
Hypothetical protein; InterPro IPR010739; COGs: COG5341 conserved hypothetical protein; KEGG: tbd:Tbd_0528 hypothetical protein; SPTR: A0NJF4 Putative uncharacterized protein; PFAM: protein of unknown function DUF1312.
       0.498
SMB80987.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.498
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
       0.498
rnz
RNAse Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.409
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.