STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB81552.1InterPro IPR015942; COGs: COG4126 Hydantoin racemase; KEGG: pzu:PHZ_c2409 Asp/Glu racemase; SPTR: O58781 228aa long hypothetical hydantoin racemase; PFAM: Asp/Glu/hydantoin racemase. (217 aa)    
Predicted Functional Partners:
SMB81576.1
Protein of unknown function; InterPro IPR009561; KEGG: vei:Veis_1102 hypothetical protein; SPTR: O58746 Putative uncharacterized protein PH1050; PFAM: protein of unknown function DUF1177.
 
     0.947
SMB81578.1
Amidohydrolase; InterPro IPR011650:IPR002933:IPR010168; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; KEGG: gsu:GSU0448 hydrolase, putative; SPTR: A1HMQ6 Amidohydrolase; PFAM: peptidase dimerisation domain protein; peptidase M20; TIGRFAM: amidohydrolase; Belongs to the peptidase M20A family.
 
     0.790
SMB81560.1
Oligopeptide transport system ATP-binding protein; InterPro IPR013563:IPR003439:IPR003593:IPR017871:IPR010066; COGs: COG4608 ABC-type oligopeptide transport system ATPase component; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein; SPTR: A3IEF6 Oligopeptide ABC transporter ATP-binding protein; SMART: AAA ATPase; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
       0.777
SMB81574.1
Oligopeptide transport system ATP-binding protein; InterPro IPR013563:IPR003439:IPR003593:IPR017871:IPR000425:IPR0100 66; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; KEGG: bja:blr1356 peptide ABC transporter ATP-binding protein; SPTR: A3IEF5 Oligopeptide ABC transporter ATP-binding protein; SMART: AAA ATPase; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
       0.777
SMB81593.1
InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: dde:Dde_1183 putative permease of ABC transporter; SPTR: A3IEF4 Oligopeptide ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component.
       0.694
SMB81602.1
InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: dde:Dde_1184 dipeptide ABC transporter, permease protein; SPTR: A3IEF3 Oligopeptide ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component.
       0.694
SMB81604.1
Peptide/nickel transport system substrate-binding protein; InterPro IPR000914; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: mmw:Mmwyl1_0114 extracellular solute-binding protein; SPTR: A3IEF2 Oligopeptide ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 5.
 
     0.634
SMB81613.1
PucR C-terminal helix-turn-helix domain-containing protein; InterPro IPR012914:IPR000160; COGs: COG3835 Sugar diacid utilization regulator; KEGG: reu:Reut_B5661 CdaR family transcriptional regulator; SPTR: A3I8M6 Putative uncharacterized protein; PFAM: purine catabolism PurC domain protein.
 
     0.527
SMB81543.1
3'-5' exoribonuclease; InterPro IPR006674:IPR004365; COGs: COG3481 HD-superfamily hydrolase; KEGG: ppd:Ppro_0440 metal dependent phosphohydrolase; SPTR: A9VI37 3'-5' exoribonuclease yhaM; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type.
       0.516
SMB92447.1
C4-dicarboxylate transporter, DctM subunit; InterPro IPR007387:IPR010656:IPR004681; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; KEGG: dps:DP3053 DctMQ fusion protein (C4-dicarboxylate transporter); SPTR: A3JCS6 C4-dicarboxylate transport system (Permease large protein); PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit.
 
     0.499
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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