node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMB84599.1 | SMB84610.1 | SAMN00017405_2373 | SAMN00017405_2374 | Predicted amino acid dehydrogenase; COGs: COG5322 dehydrogenase; KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase. | Hypothetical protein; KEGG: maq:Maqu_1059 dehydrogenase-like; SPTR: A1HRQ6 Putative uncharacterized protein. | 0.995 |
SMB84599.1 | greA | SAMN00017405_2373 | SAMN00017405_2372 | Predicted amino acid dehydrogenase; COGs: COG5322 dehydrogenase; KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.625 |
SMB84599.1 | lysS | SAMN00017405_2373 | SAMN00017405_2371 | Predicted amino acid dehydrogenase; COGs: COG5322 dehydrogenase; KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase. | lysyl-tRNA synthetase, class II; InterPro IPR018149:IPR004364:IPR004365:IPR006195:IPR002313; COGs: COG1190 Lysyl-tRNA synthetase (class II); KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2; SPTR: Q9KGG4 Lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.592 |
SMB84610.1 | SMB84599.1 | SAMN00017405_2374 | SAMN00017405_2373 | Hypothetical protein; KEGG: maq:Maqu_1059 dehydrogenase-like; SPTR: A1HRQ6 Putative uncharacterized protein. | Predicted amino acid dehydrogenase; COGs: COG5322 dehydrogenase; KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase. | 0.995 |
SMB84610.1 | greA | SAMN00017405_2374 | SAMN00017405_2372 | Hypothetical protein; KEGG: maq:Maqu_1059 dehydrogenase-like; SPTR: A1HRQ6 Putative uncharacterized protein. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.620 |
SMB84610.1 | lysS | SAMN00017405_2374 | SAMN00017405_2371 | Hypothetical protein; KEGG: maq:Maqu_1059 dehydrogenase-like; SPTR: A1HRQ6 Putative uncharacterized protein. | lysyl-tRNA synthetase, class II; InterPro IPR018149:IPR004364:IPR004365:IPR006195:IPR002313; COGs: COG1190 Lysyl-tRNA synthetase (class II); KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2; SPTR: Q9KGG4 Lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.591 |
greA | SMB84599.1 | SAMN00017405_2372 | SAMN00017405_2373 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Predicted amino acid dehydrogenase; COGs: COG5322 dehydrogenase; KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase. | 0.625 |
greA | SMB84610.1 | SAMN00017405_2372 | SAMN00017405_2374 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Hypothetical protein; KEGG: maq:Maqu_1059 dehydrogenase-like; SPTR: A1HRQ6 Putative uncharacterized protein. | 0.620 |
greA | lysS | SAMN00017405_2372 | SAMN00017405_2371 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | lysyl-tRNA synthetase, class II; InterPro IPR018149:IPR004364:IPR004365:IPR006195:IPR002313; COGs: COG1190 Lysyl-tRNA synthetase (class II); KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2; SPTR: Q9KGG4 Lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.794 |
greA | pnp | SAMN00017405_2372 | SAMN00017405_0152 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.623 |
greA | rny | SAMN00017405_2372 | SAMN00017405_1490 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. | 0.611 |
greA | rpoA | SAMN00017405_2372 | SAMN00017405_1074 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.916 |
greA | rpoB | SAMN00017405_2372 | SAMN00017405_2362 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.923 |
greA | rpoC | SAMN00017405_2372 | SAMN00017405_2361 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.961 |
greA | rpoZ | SAMN00017405_2372 | SAMN00017405_0022 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.921 |
greA | rpsO | SAMN00017405_2372 | SAMN00017405_0151 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.631 |
lysS | SMB84599.1 | SAMN00017405_2371 | SAMN00017405_2373 | lysyl-tRNA synthetase, class II; InterPro IPR018149:IPR004364:IPR004365:IPR006195:IPR002313; COGs: COG1190 Lysyl-tRNA synthetase (class II); KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2; SPTR: Q9KGG4 Lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Predicted amino acid dehydrogenase; COGs: COG5322 dehydrogenase; KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase. | 0.592 |
lysS | SMB84610.1 | SAMN00017405_2371 | SAMN00017405_2374 | lysyl-tRNA synthetase, class II; InterPro IPR018149:IPR004364:IPR004365:IPR006195:IPR002313; COGs: COG1190 Lysyl-tRNA synthetase (class II); KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2; SPTR: Q9KGG4 Lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Hypothetical protein; KEGG: maq:Maqu_1059 dehydrogenase-like; SPTR: A1HRQ6 Putative uncharacterized protein. | 0.591 |
lysS | greA | SAMN00017405_2371 | SAMN00017405_2372 | lysyl-tRNA synthetase, class II; InterPro IPR018149:IPR004364:IPR004365:IPR006195:IPR002313; COGs: COG1190 Lysyl-tRNA synthetase (class II); KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2; SPTR: Q9KGG4 Lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.794 |
lysS | pnp | SAMN00017405_2371 | SAMN00017405_0152 | lysyl-tRNA synthetase, class II; InterPro IPR018149:IPR004364:IPR004365:IPR006195:IPR002313; COGs: COG1190 Lysyl-tRNA synthetase (class II); KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2; SPTR: Q9KGG4 Lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.458 |