STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB96670.1Iron-only hydrogenase maturation protein HydE; InterPro IPR007197:IPR006638; COGs: COG0502 Biotin synthase; KEGG: sfu:Sfum_0841 biotin synthase; SPTR: A5KQV8 Putative uncharacterized protein; SMART: Elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein. (347 aa)    
Predicted Functional Partners:
SMB96678.1
Iron-only hydrogenase maturation protein HydF; InterPro IPR006073:IPR013684:IPR002917:IPR005225; COGs: COG1160 GTPase; KEGG: sfu:Sfum_1843 small GTP-binding protein; SPTR: A1HSN3 Small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; TIGRFAM: small GTP-binding protein.
   
 0.993
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
 
 0.894
SMB96675.1
Iron-only hydrogenase maturation protein HydG; InterPro IPR007197:IPR010722; COGs: COG1060 Thiamine biosynthesis protein ThiH; KEGG: sfu:Sfum_0842 thiamine biosynthesis protein ThiH; SPTR: A1HS30 Biotin and thiamin synthesis associated; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein.
 
   
0.825
SMB92091.1
[FeFe] hydrogenase, group A; InterPro IPR001450:IPR003149:IPR004108:IPR017900:IPR013352:IPR0063 11; COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; KEGG: sat:SYN_01370 iron only hydrogenase large subunit; SPTR: A5KJE2 Putative uncharacterized protein; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Ferredoxin hydrogenase; TIGRFAM: hydrogenase, Fe-only.
 
  
 0.793
SMB85293.1
Taurine-pyruvate aminotransferase; InterPro IPR005814; COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; KEGG: dvm:DvMF_0516 aminotransferase class-III; SPTR: A3SQK1 Taurine--pyruvate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.783
SMB96672.1
2-iminoacetate synthase.
       0.773
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.747
SMB81187.1
4Fe-4S dicluster domain-containing protein; InterPro IPR001450:IPR004089:IPR017900; COGs: COG0840 Methyl-accepting chemotaxis protein; KEGG: gur:Gura_4176 sigma-54 dependent trancsriptional regulator; SPTR: A5KJE4 Putative uncharacterized protein; SMART: chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.646
SMB96666.1
Hypothetical protein; KEGG: gbm:Gbem_3715 metallophosphoesterase; SPTR: A5KLA0 Putative uncharacterized protein; PFAM: metallophosphoesterase; InterPro IPR004843; COGs: COG1408 phosphohydrolase.
       0.561
argD
Acetylornithine aminotransferase apoenzyme; InterPro IPR005814:IPR004636; COGs: COG4992 Ornithine/acetylornithine aminotransferase; KEGG: gur:Gura_0226 acetylornithine aminotransferase; SPTR: Q8R7C1 Acetylornithine aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
   
 
 0.499
Your Current Organism:
Desulfonispora thiosulfatigenes
NCBI taxonomy Id: 656914
Other names: D. thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes DSM 11270, Desulfonispora thiosulfatigenes str. DSM 11270, Desulfonispora thiosulfatigenes strain DSM 11270
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