STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARAC_008242ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family. (399 aa)    
Predicted Functional Partners:
AARAC_005446
RNA binding protein (Rbm8A).
   
 0.998
AARAC_002544
Protein mago nashi.
   
 0.996
AARAC_008048
Putative RNA annealing protein Yra1.
   
 0.995
AARAC_001159
Cell cycle control protein (Cwf22).
    
 0.995
AARAC_007917
RanBP1 domain protein.
    
 0.985
AARAC_003370
ATP-dependent RNA helicase sub2.
  
0.984
AARAC_004991
Nonsense-mediated mRNA decay protein Upf3.
   
 0.982
AARAC_003898
U3 small nucleolar ribonucleoprotein Lcp5.
   
 0.981
AARAC_003287
ATP-dependent RNA helicase (Hrh1).
   
 0.978
AARAC_010393
Nuclear protein (Sgd1).
   
 
 0.972
Your Current Organism:
Aspergillus arachidicola
NCBI taxonomy Id: 656916
Other names: A. arachidicola, Aspergillus arachidicola Pildain, Frisvad & Samson, 2008, Aspergillus sp. JV-2007b, CBS 117610
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