STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARAC_005491C6 zinc finger domain protein. (912 aa)    
Predicted Functional Partners:
AARAC_010440
Pre-rRNA-processing protein IPI1.
   
 0.841
AARAC_011727
Mitotic spindle checkpoint component mad2.
   
 0.838
AARAC_011630
Transcription initiation factor TFIID subunit 12.
   
 0.830
AARAC_009533
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.829
AARAC_002844
Transcription initiation factor TFIID complex subunit.
    
 0.829
AARAC_011114
Transcription initiation factor TFIID.
    
 0.829
AARAC_007272
TATA-binding protein associated factor Taf2.
    
 0.829
AARAC_000208
Nuclear pore complex subunit.
   
 0.828
AARAC_001140
mRNA 3'-end-processing protein yth1.
    
 0.828
AARAC_009811
CPSF_A domain-containing protein.
    
 0.828
Your Current Organism:
Aspergillus arachidicola
NCBI taxonomy Id: 656916
Other names: A. arachidicola, Aspergillus arachidicola Pildain, Frisvad & Samson, 2008, Aspergillus sp. JV-2007b, CBS 117610
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