STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARAC_008969Exopolygalacturonase C; Belongs to the glycosyl hydrolase 28 family. (437 aa)    
Predicted Functional Partners:
AARAC_007494
Pectate lyase plyB.
     
 0.812
AARAC_007568
Uncharacterized protein.
   
   0.752
AARAC_004442
Mitochondrial 54S ribosomal protein YmL23.
   
   0.730
AARAC_002981
Pectinesterase; Involved in maceration and soft-rotting of plant tissue.
     
 0.714
AARAC_009647
Ribosomal_L2_C domain-containing protein.
   
 
 0.705
AARAC_005734
LYR family protein.
    
 0.696
AARAC_005733
Iron-sulfur cluster biosynthesis protein Isd11; Belongs to the complex I LYR family.
    
 0.696
AARAC_006969
RNA polymerase I specific transcription initiation factor Rrn7.
    
  0.683
AARAC_008382
Ankyrin repeat protein nuc-2.
    
 0.675
AARAC_003463
Uncharacterized protein.
    
  0.661
Your Current Organism:
Aspergillus arachidicola
NCBI taxonomy Id: 656916
Other names: A. arachidicola, Aspergillus arachidicola Pildain, Frisvad & Samson, 2008, Aspergillus sp. JV-2007b, CBS 117610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.