STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARAC_010993RNA polymerase II transcription elongation factor (Ctr9). (1204 aa)    
Predicted Functional Partners:
AARAC_005100
Uncharacterized protein.
   
 0.999
AARAC_010716
WD domain protein.
    
 0.999
AARAC_008304
RNA polymerase-associated protein LEO1.
  
 0.999
AARAC_011927
Pol II transcription elongation factor subunit Cdc73.
   
 0.999
AARAC_009042
RNA polymerase II transcription elongation factor Rtf1p.
  
 0.997
AARAC_001531
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
   
 0.995
AARAC_011772
Transcription elongation complex subunit (Cdc68).
   
 0.990
AARAC_009149
Histone H2B; Belongs to the histone H2B family.
   
 0.979
AARAC_005272
Uncharacterized protein.
   
 0.978
AARAC_011854
Transcription elongation factor spt6.
  
 0.976
Your Current Organism:
Aspergillus arachidicola
NCBI taxonomy Id: 656916
Other names: A. arachidicola, Aspergillus arachidicola Pildain, Frisvad & Samson, 2008, Aspergillus sp. JV-2007b, CBS 117610
Server load: low (14%) [HD]