STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKF36787.1Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)    
Predicted Functional Partners:
KKF36786.1
ImpE family T6SS protein Cts1E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.979
KKF36031.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.923
KKF37896.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.922
KKF36021.1
Protein of avirulence locus ImpE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.918
KKF34793.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.914
KKF36027.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.877
tssB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.876
KKF36026.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.856
tssC
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.856
tssG
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.855
Your Current Organism:
Erwinia tracheiphila
NCBI taxonomy Id: 65700
Other names: ATCC 33245, Bacillus tracheiphilus, Bacterium tracheiphilus, CFBP 2355, CIP 105205, DSM 21139, E. tracheiphila, Erwinia amylovora var. tracheiphila, ICMP 5845, LMG 2707, LMG 2906, LMG:2707, LMG:2906, NCPPB 2452
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.