Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KKF37603.1Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
KKF37604.1
Bacterial conjugation TrbI-like family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
KKF37606.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.942
KKF37607.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.942
KKF37602.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.874
KKF36329.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
KKF34136.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
KKF36328.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
KKF37855.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
KKF36333.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
KKF37857.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
Your Current Organism:
Erwinia tracheiphila
NCBI taxonomy Id: 65700
Other names: ATCC 33245, Bacillus tracheiphilus, Bacterium tracheiphilus, CFBP 2355, CIP 105205, DSM 21139, E. tracheiphila, Erwinia amylovora var. tracheiphila, ICMP 5845, LMG 2707, LMG 2906, LMG:2707, LMG:2906, NCPPB 2452
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