STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP78488.1Uncharacterized conserved protein. (466 aa)    
Predicted Functional Partners:
SEQ39699.1
Hypothetical protein.
   
 0.766
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.622
SEQ28002.1
Thiamine pyrophosphokinase.
  
     0.577
SEQ86061.1
Hypothetical protein.
  
     0.569
SEP96549.1
Uncharacterized conserved protein, heparinase superfamily.
  
     0.566
SEQ35176.1
Z1 domain-containing protein.
    
  0.551
SEP63996.1
Periplasmic chaperone for outer membrane proteins Skp.
  
   
 0.512
SEQ35380.1
Hypothetical protein.
  
     0.512
SEQ37608.1
DnaJ domain-containing protein.
  
 
 
 0.507
SEQ09935.1
Exodeoxyribonuclease-5.
  
     0.501
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.