STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP81675.1Hypothetical protein. (271 aa)    
Predicted Functional Partners:
SER03645.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
   
 0.849
SER00270.1
Type III flagellar switch regulator (C-ring) FliN C-term.
  
   0.796
SEP73874.1
Pilus assembly protein CpaE.
  
    0.756
SEP57665.1
Hypothetical protein.
  
     0.716
SEQ83366.1
Hypothetical protein.
  
     0.714
SEP81708.1
3-hydroxyacyl-CoA dehydrogenase.
  
    0.710
SEQ25118.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
     0.674
SEQ29072.1
Sporulation related domain-containing protein.
  
    0.673
SEP55853.1
Transketolase; Belongs to the transketolase family.
  
 
 0.668
SEQ11839.1
Membrane associated serine protease, rhomboid family.
  
    0.650
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.