STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP72729.1Hypothetical protein. (142 aa)    
Predicted Functional Partners:
SEP72759.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.846
SEP72696.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
       0.674
SEP72790.1
Aspartate kinase; Belongs to the aspartokinase family.
       0.656
SEP72826.1
Phosphotransferase system, enzyme I, PtsP; Belongs to the PEP-utilizing enzyme family.
 
     0.643
SEQ45598.1
Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family.
  
     0.475
SEQ37448.1
Cobaltochelatase CobT subunit.
  
     0.457
SEQ76030.1
N-formylglutamate amidohydrolase.
 
     0.438
SEP72652.1
AraC family transcriptional regulator, transcriptional activator of pobA.
  
    0.426
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.