STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP73592.13-oxoacid CoA-transferase subunit B. (208 aa)    
Predicted Functional Partners:
SEP73562.1
3-oxoacid CoA-transferase subunit A.
 0.999
SEQ46846.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.911
SEQ93793.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.906
SEQ39343.1
hydroxymethylglutaryl-CoA lyase.
  
 
 0.891
SEQ59328.1
Enoyl-CoA hydratase/carnithine racemase.
  
 0.889
SEP95492.1
Hypothetical protein.
  
 
 0.882
SEP93642.1
3-hydroxy-3-methylglutaryl CoA synthase.
    
 0.875
SEP81708.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.860
SEP71962.1
3-oxoadipate enol-lactonase.
  
 
 0.851
SEQ38117.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.850
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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