STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP73933.1Type II secretion system protein F (GspF). (322 aa)    
Predicted Functional Partners:
SEP73961.1
Tight adherence protein C.
 
  
0.998
SEP73874.1
Pilus assembly protein CpaE.
 
  
 0.996
SEP73767.1
Pilus assembly protein CpaB.
 
  
 0.988
SEP73904.1
Pilus assembly protein CpaF.
 
  
 0.978
SEP74057.1
Prepilin peptidase CpaA.
 
  
 0.975
SEP73991.1
TPR repeat-containing protein.
 
  
 0.961
SEQ71020.1
Protein of unknown function.
   
    0.958
SEP74024.1
Hypothetical protein.
 
  
 0.954
SEP73810.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.952
SEP74087.1
Hypothetical protein.
 
    0.939
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.