STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP93004.1Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. (488 aa)    
Predicted Functional Partners:
SEP95190.1
Acyl transferase domain-containing protein.
 
 0.929
SEP95120.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
 
0.856
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.685
SEQ61241.1
Exopolysaccharide biosynthesis protein YbjH.
    
  0.677
SEP55714.1
Hypothetical protein.
 
 
 
  0.597
SEP59153.1
glutaryl-CoA dehydrogenase.
 
 
 
  0.597
SEP76113.1
acyl-CoA dehydrogenase.
 
 
 
  0.597
SEP79593.1
Hypothetical protein.
   
 
  0.597
SEP82149.1
(2S)-methylsuccinyl-CoA dehydrogenase.
   
 
  0.597
SEP84563.1
Acyl-CoA dehydrogenase.
   
 
  0.597
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.