STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ27967.1Hypothetical protein. (599 aa)    
Predicted Functional Partners:
SEP95790.1
PAS domain S-box-containing protein.
   
 
  0.855
SEQ08719.1
Cell division protein DedD (protein involved in septation).
 
     0.782
SEQ41245.1
Hypothetical protein.
  
     0.753
SEP56300.1
Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family.
  
     0.748
SEQ90311.1
Flp pilus assembly protein TadG.
  
    0.745
SEQ90288.1
Flp pilus assembly protein TadG.
  
    0.737
SEQ28002.1
Thiamine pyrophosphokinase.
       0.713
SEQ35328.1
Hypothetical protein.
  
     0.700
SEP81254.1
Hint domain-containing protein.
  
 
  0.690
SEQ90260.1
Flp pilus assembly protein TadG.
  
    0.679
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.