STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ60203.1Glyoxylase, beta-lactamase superfamily II. (333 aa)    
Predicted Functional Partners:
SEQ60080.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
    0.943
SEQ99687.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
 
    0.826
SEQ02145.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.699
SEQ60001.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
 
    0.679
SEQ60133.1
Tripartite ATP-independent transporter, DctQ component.
       0.661
SEQ60160.1
TRAP transporter, DctM subunit.
       0.661
SEQ83563.1
Hypothetical protein.
  
 0.608
SEQ73488.1
acyl-CoA dehydrogenase.
  
    0.550
SEP96928.1
Sulfide:quinone oxidoreductase.
    
  0.532
SEQ66353.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
  0.528
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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