STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ60342.1Rieske [2Fe-2S] domain-containing protein. (437 aa)    
Predicted Functional Partners:
SEQ60371.1
Glutamine synthetase.
 
     0.865
SEQ82288.1
Vanillate O-demethylase ferredoxin subunit.
 
  
 0.848
SEQ79560.1
4-hydroxybenzoyl-CoA thioesterase.
  
     0.698
SEQ60396.1
5-carboxymethyl-2-hydroxymuconate isomerase.
 
     0.671
SEQ79536.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.594
SEQ59270.1
Phenylpropionate dioxygenase, large terminal subunit.
 
  
  0.504
SEQ79512.1
benzoate-CoA ligase.
  
     0.463
SEP94874.1
Predicted dehydrogenase.
    
  0.462
SEP54903.1
Gentisate 1,2-dioxygenase.
 
   
 0.446
SEQ60228.1
Transcriptional regulator, IclR family.
 
     0.446
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
Server load: low (16%) [HD]