STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ79119.1Hypothetical protein. (67 aa)    
Predicted Functional Partners:
SEQ79092.1
Hypothetical protein.
       0.789
SEQ79170.1
Type IV secretion system protein VirB10.
       0.787
SEQ79200.1
Type IV secretion system protein VirB9.
       0.787
SEQ79229.1
Type IV secretion system protein VirB8.
       0.787
SEQ79263.1
Type IV secretion system protein.
       0.781
SEQ79142.1
Type IV secretion system protein VirB11.
       0.773
SEQ79063.1
Type IV secretion system protein VirB6.
       0.767
SEQ79035.1
Hypothetical protein.
       0.757
SEQ79294.1
Transposase.
       0.558
SEQ79327.1
DNA replication protein DnaC.
       0.558
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.