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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ79512.1benzoate-CoA ligase. (547 aa)    
Predicted Functional Partners:
SEQ79536.1
2-polyprenyl-6-methoxyphenol hydroxylase.
 
 0.984
SEQ79560.1
4-hydroxybenzoyl-CoA thioesterase.
 
 
  0.931
SEQ64796.1
[acyl-carrier-protein] S-malonyltransferase.
  
 
 0.906
SEP95190.1
Acyl transferase domain-containing protein.
 
 
 0.858
SEP72602.1
P-hydroxybenzoate 3-monooxygenase.
   
 
  0.844
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
   
 
  0.731
SEP55024.1
Amidase.
   
 
  0.726
SEQ09025.1
Amidase; Belongs to the amidase family.
   
 
  0.726
SEQ46542.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 0.723
SEQ87288.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 0.723
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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