SEQ94512.1 protein (Litorimicrobium taeanense)

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SEQ94512.1

Type IV secretion system protein VirB10. (474 aa)

Predicted Functional Partners:

SEQ94486.1

0.990

SEQ94292.1

0.977

SEQ94457.1

0.971

SEQ94435.1

0.962

SEQ94268.1

0.960

SEQ94539.1

0.948

SEQ54105.1

0.944

SEQ79200.1

0.941

SER08392.1

0.941

SEQ94377.1

0.926

Your Current Organism:

Litorimicrobium taeanense

NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEQ54105.1	SEQ94268.1	SAMN04488092_10885	SAMN04488092_11736	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB3.	0.831
SEQ54105.1	SEQ94292.1	SAMN04488092_10885	SAMN04488092_11737	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB4.	0.932
SEQ54105.1	SEQ94377.1	SAMN04488092_10885	SAMN04488092_11740	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB5.	0.554
SEQ54105.1	SEQ94435.1	SAMN04488092_10885	SAMN04488092_11742	Type IV secretion system protein VirB9.	TrbL/VirB6 plasmid conjugal transfer protein.	0.685
SEQ54105.1	SEQ94457.1	SAMN04488092_10885	SAMN04488092_11743	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB8.	0.842
SEQ54105.1	SEQ94512.1	SAMN04488092_10885	SAMN04488092_11745	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB10.	0.944
SEQ54105.1	SEQ94539.1	SAMN04488092_10885	SAMN04488092_11746	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.	0.572
SEQ79200.1	SEQ94268.1	SAMN04488092_11357	SAMN04488092_11736	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB3.	0.840
SEQ79200.1	SEQ94292.1	SAMN04488092_11357	SAMN04488092_11737	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB4.	0.934
SEQ79200.1	SEQ94377.1	SAMN04488092_11357	SAMN04488092_11740	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB5.	0.586
SEQ79200.1	SEQ94435.1	SAMN04488092_11357	SAMN04488092_11742	Type IV secretion system protein VirB9.	TrbL/VirB6 plasmid conjugal transfer protein.	0.691
SEQ79200.1	SEQ94457.1	SAMN04488092_11357	SAMN04488092_11743	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB8.	0.850
SEQ79200.1	SEQ94512.1	SAMN04488092_11357	SAMN04488092_11745	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB10.	0.941
SEQ79200.1	SEQ94539.1	SAMN04488092_11357	SAMN04488092_11746	Type IV secretion system protein VirB9.	Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.	0.570
SEQ94268.1	SEQ54105.1	SAMN04488092_11736	SAMN04488092_10885	Type IV secretion system protein VirB3.	Type IV secretion system protein VirB9.	0.831
SEQ94268.1	SEQ79200.1	SAMN04488092_11736	SAMN04488092_11357	Type IV secretion system protein VirB3.	Type IV secretion system protein VirB9.	0.840
SEQ94268.1	SEQ94292.1	SAMN04488092_11736	SAMN04488092_11737	Type IV secretion system protein VirB3.	Type IV secretion system protein VirB4.	0.985
SEQ94268.1	SEQ94377.1	SAMN04488092_11736	SAMN04488092_11740	Type IV secretion system protein VirB3.	Type IV secretion system protein VirB5.	0.949
SEQ94268.1	SEQ94435.1	SAMN04488092_11736	SAMN04488092_11742	Type IV secretion system protein VirB3.	TrbL/VirB6 plasmid conjugal transfer protein.	0.972
SEQ94268.1	SEQ94457.1	SAMN04488092_11736	SAMN04488092_11743	Type IV secretion system protein VirB3.	Type IV secretion system protein VirB8.	0.973

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

54

average node degree:

9.82

avg. local clustering coefficient:

0.982

expected number of edges:

28

PPI enrichment p-value:

4.93e-06

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006096

Glycolytic process

6 of 13

1.96

3.26

4.15e-08

GO:0006006

Glucose metabolic process

5 of 23

1.63

2.09

5.94e-06

GO:0006091

Generation of precursor metabolites and energy

9 of 82

1.34

2.01

1.32e-08

GO:0006094

Gluconeogenesis

3 of 8

1.87

1.63

0.00044

GO:0005975

Carbohydrate metabolic process

8 of 169

0.97

1.01

1.14e-05

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016861

Intramolecular oxidoreductase activity, interconverting aldoses and ketoses

3 of 11

1.73

0.87

0.0188

GO:0004347

glucose-6-phosphate isomerase activity

2 of 2

2.3

0.86

0.0257

GO:0016853

Isomerase activity

4 of 63

1.1

0.6

0.0316

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2362

Glycolysis, and Fructose-bisphosphate aldolase class-II

8 of 17

1.97

4.58

2.99e-12

CL:2364

Glycolysis, and Fructose-bisphosphate aldolase class-II

7 of 12

2.06

4.53

2.85e-11

CL:2358

Mixed, incl. Glycolytic process, and Aldehyde-lyase activity

9 of 29

1.79

4.06

1.38e-12

CL:2366

Glycolysis, and Fructose-bisphosphate aldolase class-II

5 of 7

2.15

3.56

3.32e-08

CL:2179

Phosphotransferase system (PTS), and Carbohydrate metabolic process

10 of 161

1.09

1.45

3.72e-09

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00010

Glycolysis / Gluconeogenesis

9 of 45

1.6

3.22

9.71e-12

map01200

Carbon metabolism

10 of 101

1.29

2.12

4.28e-11

map01120

Microbial metabolism in diverse environments

10 of 222

0.95

1.11

5.37e-08

map00030

Pentose phosphate pathway

4 of 42

1.28

1.11

0.00092

map01230

Biosynthesis of amino acids

7 of 141

0.99

1.01

3.20e-05

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0324

Glycolysis

6 of 11

2.03

3.65

6.84e-09

KW-0312

Gluconeogenesis

3 of 4

2.17

1.82

0.00031

KW-0413

Isomerase

4 of 54

1.17

0.8

0.0079

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