STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ93527.1Toprim domain-containing protein. (348 aa)    
Predicted Functional Partners:
SEQ93552.1
Methyltransferase domain-containing protein.
     0.940
SEQ93500.1
Protein of unknown function.
 
     0.862
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.809
SEQ97196.1
Protein of unknown function.
 
     0.776
SEQ97151.1
Phospholipid N-methyltransferase.
     0.774
SEQ96578.1
ParB family protein.
 
     0.774
SEQ93392.1
Chromosome partitioning protein, ParB family.
 
     0.772
SEQ93768.1
Chromosome partitioning protein, ParB family.
 
     0.768
SEQ96837.1
Hypothetical protein.
 
     0.758
SEQ78485.1
Protein of unknown function.
 
     0.557
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.