STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ97500.1Mobilisation protein (MobC). (195 aa)    
Predicted Functional Partners:
SEQ97529.1
Type IV secretion system T-DNA border endonuclease VirD2.
 
     0.947
SEQ97548.1
Type IV secretion system protein VirD4.
     0.946
SER08336.1
Type IV secretion system protein VirB5.
  
     0.775
SER08514.1
Type IV secretion system protein VirB6.
  
     0.775
SER08364.1
Type IV secretion system protein VirB8.
  
     0.774
SER08170.1
Type IV secretion system protein VirB2.
  
     0.774
SER08215.1
Type IV secretion system protein VirB3.
  
     0.774
SER08427.1
Type IV secretion system protein VirB10.
  
     0.772
SEQ97470.1
Chromosome partitioning protein.
  
     0.768
SER08245.1
Type IV secretion system protein VirB4.
  
     0.768
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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