STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER06087.1Uncharacterized protein, contains caspase domain. (1014 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.988
SEQ52437.1
Metallo-beta-lactamase family protein.
    
 0.988
SEQ39699.1
Hypothetical protein.
   
 0.974
SEP62831.1
Calcineurin-like phosphoesterase.
   
 0.970
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.970
SEQ00562.1
Tfp pilus assembly protein PilF.
 
 
 0.948
SEQ99607.1
Tetratricopeptide repeat-containing protein.
 
 
 0.946
SEQ91499.1
Hypothetical protein.
    
 0.938
SER03598.1
Sulfotransferase family protein.
    
 0.938
SER06065.1
Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein).
 
     0.894
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.