Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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KP79_PYT04192Zinc finger protein 629. (584 aa)    
Predicted Functional Partners:
KP79_PYT16951
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.501
KP79_PYT10738
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.485
KP79_PYT06568
DNA-directed RNA polymerase II subunit RPB11.
    
 0.485
KP79_PYT00499
DNA-directed RNA polymerase II subunit RPB4.
    
 0.485
KP79_PYT08628
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.485
KP79_PYT13446
DNA-directed RNA polymerase II subunit RPB3.
    
 0.485
KP79_PYT07756
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.485
KP79_PYT22643
RNA polymerase-associated protein LEO1.
    
 0.484
KP79_PYT22112
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.484
KP79_PYT15801
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.479
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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