Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KP79_PYT1144118 kDa learning-associated protein of slug. (122 aa)    
Predicted Functional Partners:
KP79_PYT06998
Zinc finger protein 593.
   
 
 0.762
KP79_PYT24044
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.727
KP79_PYT18072
Thyroid transcription factor 1-associated protein 26.
   
    0.719
KP79_PYT25518
Translation machinery-associated protein 16.
   
 
 0.719
KP79_PYT16898
Nucleolar protein 16.
   
    0.718
KP79_PYT04876
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
   0.713
KP79_PYT05887
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
   0.705
KP79_PYT08529
Ribosome biogenesis protein BRX1-like.
   
   0.690
KP79_PYT21649
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
   0.690
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
   
 
 0.665
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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