Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT08525Exosome complex component RRP40. (236 aa)    
Predicted Functional Partners:
KP79_PYT23883
Exosome complex component MTR3.
  
 0.999
KP79_PYT12738
Exosome complex component RRP43.
   
 0.999
KP79_PYT16930
Exosome complex component CSL4.
   
 0.999
KP79_PYT13835
Exosome complex component RRP41.
  
 0.999
KP79_PYT12328
Exosome complex component RRP45.
   
 0.999
KP79_PYT05772
Exosome complex component RRP46.
  
 0.999
KP79_PYT04416
Exosome complex component RRP4.
   
 0.999
KP79_PYT14515
Exosome complex component RRP42.
  
 0.999
KP79_PYT10433
Nuclear nucleic acid-binding protein C1D.
   
 0.997
KP79_PYT21106
Exosome component 10.
   
 0.996
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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