Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT10934Host cell factor 1. (1667 aa)    
Predicted Functional Partners:
KP79_PYT04061
WD repeat-containing protein 5.
    
 0.994
KP79_PYT06295
Set1/Ash2 histone methyltransferase complex subunit ASH2.
   
 0.987
KP79_PYT15698
Histone-lysine N-methyltransferase SETD1B-A.
   
 0.985
KP79_PYT24415
Microspherule protein 1.
    
 0.979
KP79_PYT22093
Retinoblastoma-binding protein 5.
   
 0.973
KP79_PYT03904
KAT8 regulatory NSL complex subunit 2.
    
 0.970
KP79_PYT12898
TPR_REGION domain-containing protein.
   
 0.959
KP79_PYT12897
TPR_REGION domain-containing protein.
   
 0.959
KP79_PYT08039
Polycomb group protein ASXL3.
    
 0.942
KP79_PYT11882
WD repeat-containing protein 82.
   
 0.926
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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