Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KP79_PYT14211ATP-dependent RNA helicase DDX27; Belongs to the DEAD box helicase family. (729 aa)    
Predicted Functional Partners:
KP79_PYT16592
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.994
KP79_PYT07092
RNA-binding protein 28.
   
 
 0.992
KP79_PYT21768
Nucleolar complex protein 2-like.
   
 
 0.990
KP79_PYT04876
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.989
KP79_PYT10715
RNA-binding protein 34.
   
  0.988
KP79_PYT07611
RNA helicase.
  
 
0.986
KP79_PYT23572
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.
  
 
0.985
KP79_PYT06659
Ribosome production factor 2-like.
   
 
 0.984
KP79_PYT19213
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.981
KP79_PYT05215
Suppressor of SWI4 1-like.
   
   0.981
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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