Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT09722Vacuolar protein sorting-associated protein 54. (974 aa)    
Predicted Functional Partners:
KP79_PYT16441
Vacuolar protein sorting-associated protein 53-like.
   
 0.998
KP79_PYT17272
Vacuolar protein sorting-associated protein 51-like.
    
 0.997
KP79_PYT17982
Uncharacterized protein.
    
 
 0.987
KP79_PYT09047
Protein TSSC1.
    
 
 0.985
KP79_PYT13636
Syntaxin-16; Belongs to the syntaxin family.
    
 0.953
KP79_PYT04756
Syntaxin-6.
    
 0.907
KP79_PYT20147
Ras-related protein Rab-6A.
    
 0.881
KP79_PYT01429
Conserved oligomeric Golgi complex subunit 1.
     
 0.877
KP79_PYT22111
Conserved oligomeric Golgi complex subunit 8.
     
 0.861
KP79_PYT13946
Conserved oligomeric Golgi complex subunit 4.
     
 0.861
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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