STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT08463E3 ubiquitin-protein ligase HUWE1. (4492 aa)    
Predicted Functional Partners:
KP79_PYT15003
Bcl-2-like protein 1.
    
 
 0.826
KP79_PYT20483
E3 ubiquitin-protein ligase TRIP12.
   
 
0.745
KP79_PYT00944
3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.634
KP79_PYT09651
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.622
KP79_PYT03955
Ubiquitin-60S ribosomal protein L40.
    
 0.597
KP79_PYT04631
E3 ubiquitin-protein ligase UBR4.
   
 
 0.595
KP79_PYT19465
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.547
KP79_PYT05712
THO complex subunit 4-A.
    
 
 0.546
KP79_PYT05430
Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family.
   
 
 0.539
KP79_PYT00139
Protein SMG9.
      
 0.537
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.