Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT06518Pre-mRNA-splicing factor RBM22. (435 aa)    
Predicted Functional Partners:
KP79_PYT09428
Crooked neck-like protein 1.
   
 0.999
KP79_PYT04326
Pre-mRNA-splicing factor SYF1.
   
 0.998
KP79_PYT06559
Protein BUD31-like.
   
 0.998
KP79_PYT10797
SNW domain-containing protein 1.
   
 0.995
KP79_PYT08830
Intron-binding protein aquarius.
    
 0.994
KP79_PYT08571
Peptidyl-prolyl cis-trans isomerase E.
   
 0.993
KP79_PYT11024
Pre-mRNA-splicing factor ISY1-like.
   
 0.993
KP79_PYT07461
Pre-mRNA-splicing factor syf2.
   
 0.987
KP79_PYT12496
Pleiotropic regulator 1.
   
 0.980
KP79_PYT16990
Transcription elongation regulator 1.
   
 0.974
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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