Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KP79_PYT21326RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (204 aa)    
Predicted Functional Partners:
KP79_PYT21325
Pre-mRNA 3' end processing protein WDR33.
    
 0.994
KP79_PYT11882
WD repeat-containing protein 82.
   
 0.992
KP79_PYT06212
Cleavage and polyadenylation specificity factor subunit 4.
   
 0.992
KP79_PYT18658
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.989
KP79_PYT13993
Cleavage and polyadenylation specificity factor subunit 1.
    
 0.986
KP79_PYT09900
Symplekin.
   
 
 0.982
KP79_PYT13048
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.982
KP79_PYT04211
Transcription initiation factor IIB.
   
 0.981
KP79_PYT12775
Pre-mRNA cleavage complex 2 protein Pcf11.
   
 
 0.978
KP79_PYT05926
E3 ubiquitin-protein ligase RBBP6.
    
 
 0.952
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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