Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KP79_PYT18387Transcription intermediary factor 1-alpha. (1043 aa)    
Predicted Functional Partners:
KP79_PYT18737
Histone-lysine N-methyltransferase SETDB1.
    
 0.818
KP79_PYT22635
Mothers against decapentaplegic homolog.
   
 0.799
KP79_PYT06633
ATP-dependent helicase SMARCAD1.
   
 
 0.655
KP79_PYT03896
Chromobox protein-like 3.
    
 0.623
KP79_PYT03895
Chromobox protein-like 1.
    
 0.623
KP79_PYT07578
Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.
   
 
 0.621
KP79_PYT02244
Retinoic acid receptor RXR.
    
 
 0.593
KP79_PYT17406
Anaphase-promoting complex subunit 4.
   
   0.571
KP79_PYT00115
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
 
 0.571
KP79_PYT24107
Cell division cycle protein 27-like.
   
   0.569
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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