Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT04688UPF0361 protein C3orf37-like. (98 aa)    
Predicted Functional Partners:
KP79_PYT00581
SprT-like domain-containing protein Spartan.
      
 0.710
KP79_PYT18269
E3 ubiquitin-protein ligase RFWD3.
      
 0.697
KP79_PYT01642
Guanine nucleotide-binding protein subunit beta-2-like 1.
   
   0.678
KP79_PYT04324
WD repeat-containing protein 31.
   
   0.578
KP79_PYT02320
RNA 3'-terminal phosphate cyclase-like protein.
     
 0.478
KP79_PYT09886
Tyrosyl-DNA phosphodiesterase 1.
      
 0.470
KP79_PYT18216
Single-stranded DNA-binding protein, mitochondrial.
      
 0.461
KP79_PYT09109
Replication protein A 32 kDa subunit.
   
   0.413
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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