Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT06065Noggin-3. (251 aa)    
Predicted Functional Partners:
KP79_PYT10182
Bone morphogenetic protein 2.
    
 0.957
KP79_PYT23704
Bone morphogenetic protein 7.
    
 0.941
KP79_PYT06064
Noggin-2.
  
  
0.927
KP79_PYT08844
Bone morphogenetic protein 4.
    
 0.919
KP79_PYT08967
Bone morphogenetic protein 2.
    
 0.919
KP79_PYT04237
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
   
  
 0.618
KP79_PYT05254
Axin-2.
      
 0.523
KP79_PYT04779
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
      
 0.484
KP79_PYT10386
Rho-related GTP-binding protein RhoQ.
      
 0.484
KP79_PYT08715
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
      
 0.484
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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