Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT22643RNA polymerase-associated protein LEO1. (794 aa)    
Predicted Functional Partners:
KP79_PYT03860
Parafibromin.
   
 0.999
KP79_PYT09358
RNA polymerase II-associated factor 1-like.
   
 0.999
KP79_PYT09934
RNA polymerase-associated protein RTF1-like.
   
 0.998
KP79_PYT18097
RNA polymerase-associated protein CTR9-like.
   
 0.998
KP79_PYT18098
RNA polymerase-associated protein CTR9-like.
   
 0.998
KP79_PYT23145
WD repeat-containing protein 61.
    
 0.997
KP79_PYT09566
Cyclin-dependent kinase 2-interacting protein.
   
 0.997
KP79_PYT13789
FACT complex subunit SPT16.
   
 0.997
KP79_PYT16577
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
   
 0.996
KP79_PYT23709
Transcription elongation factor B polypeptide 3.
    
 0.981
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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