Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KP79_PYT10601DNA repair protein XRCC3. (339 aa)    
Predicted Functional Partners:
KP79_PYT16414
DNA repair protein RAD51-like 3.
  
0.999
KP79_PYT10258
DNA repair protein RAD51-like A; Belongs to the RecA family.
  
 
 0.995
KP79_PYT14893
Breast cancer type 2 susceptibility protein-like.
   
 0.993
KP79_PYT03879
DNA repair protein XRCC2.
   
 0.989
KP79_PYT11275
DNA repair protein RAD52-like.
    
 0.968
KP79_PYT12060
F-box only protein 18.
  
 
 0.951
KP79_PYT04254
DNA repair protein SWI5-like.
    
 0.946
KP79_PYT10817
DNA repair protein RAD51-like 2.
  
 
0.943
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 0.939
KP79_PYT10818
DNA repair protein RAD51-like 2.
    
 0.937
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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