Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT17276Serine/arginine-rich splicing factor 12. (129 aa)    
Predicted Functional Partners:
KP79_PYT16555
Serine/arginine-rich splicing factor 1.
   
 0.954
KP79_PYT04655
Protein HEXIM.
    
 
 0.932
KP79_PYT08831
Splicing regulatory glutamine/lysine-rich protein 1.
   
 0.900
KP79_PYT09630
Serine/arginine-rich splicing factor 4.
   
 0.820
KP79_PYT18922
Serine/arginine-rich splicing factor 3.
   
 0.805
KP79_PYT19418
Transformer-2 protein-like alpha.
   
 0.799
KP79_PYT14418
RNA-binding protein 39.
   
 0.769
KP79_PYT16556
Serine/arginine-rich splicing factor 1.
   
 0.742
KP79_PYT24093
Heterogeneous nuclear ribonucleoprotein L.
   
 0.736
KP79_PYT12825
G-rich sequence factor 1.
   
 0.701
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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