Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT17765Ras-related protein Rab-24. (213 aa)    
Predicted Functional Partners:
KP79_PYT16341
Rab5 GDP/GTP exchange factor.
   
 0.917
KP79_PYT17561
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.878
KP79_PYT08393
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.849
KP79_PYT20876
Vacuolar segregation protein PEP7.
    
 0.792
KP79_PYT08938
Cyclin-G-associated kinase.
    
 0.719
KP79_PYT10143
Protein sel-1-like 1.
      
 0.708
KP79_PYT14788
Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.687
KP79_PYT15756
Ankyrin repeat and FYVE domain-containing protein 1.
    
 0.683
KP79_PYT13228
Rab proteins geranylgeranyltransferase component A 2.
    
 0.660
KP79_PYT16844
Rab GTPase-binding effector protein 1.
    
 0.647
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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