Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT12169DENN domain-containing protein 3. (1296 aa)    
Predicted Functional Partners:
KP79_PYT16334
Serine/threonine-protein kinase unc-51.
    
  0.729
KP79_PYT14699
Nicalin; Belongs to the nicastrin family.
      
 0.682
KP79_PYT17036
Ras-related protein Rab-28.
    
 0.675
KP79_PYT05079
Protein TBATA.
      
 0.654
KP79_PYT07776
DENN domain-containing protein 5B.
    
 
 0.633
KP79_PYT17967
Suppression of tumorigenicity 5 protein.
    
 
 0.572
KP79_PYT13228
Rab proteins geranylgeranyltransferase component A 2.
     
 0.560
KP79_PYT17561
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
  0.496
KP79_PYT23748
Chromatin accessibility complex protein 1.
      
 0.491
KP79_PYT12190
Cytoskeleton-associated protein 2-like.
      
 0.460
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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