STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT09905Ras-related protein Rab-4B. (211 aa)    
Predicted Functional Partners:
KP79_PYT20876
Vacuolar segregation protein PEP7.
    
 
 0.904
KP79_PYT13228
Rab proteins geranylgeranyltransferase component A 2.
    
 0.696
KP79_PYT04066
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.694
KP79_PYT06651
Intersectin-1.
    
 0.691
KP79_PYT21242
Intersectin-1.
    
 0.691
KP79_PYT12487
Intersectin-2.
    
 0.691
KP79_PYT24506
Ras-related protein Rab-5C.
  
0.670
KP79_PYT11858
Tyrosine-protein kinase transforming protein SEA.
   
 0.661
KP79_PYT11860
Hepatocyte growth factor receptor.
   
 0.661
KP79_PYT11859
Hepatocyte growth factor receptor.
   
 0.661
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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