Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KP79_PYT23079Transcription initiation factor IIA subunit 2. (157 aa)    
Predicted Functional Partners:
KP79_PYT09558
Transcription initiation factor IIA subunit 1.
    
 0.998
KP79_PYT18153
Transcription initiation factor TFIID subunit 11.
    
 0.993
KP79_PYT06603
Transcription initiation factor TFIID subunit 12.
   
 0.993
KP79_PYT08030
Transcription initiation factor TFIID subunit 2.
    
 0.991
KP79_PYT18313
Transcription initiation factor TFIID subunit 8.
    
 0.991
KP79_PYT12867
Transcription initiation factor TFIID subunit 1.
    
 0.989
KP79_PYT08154
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.986
KP79_PYT02181
Transcription initiation factor TFIID subunit 9B.
   
 0.983
KP79_PYT01897
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
   
 0.983
KP79_PYT04211
Transcription initiation factor IIB.
   
 0.981
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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